PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT08133
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 406aa    MW: 44216.5 Da    PI: 6.6783
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT08133genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.54.8e-18219273256
               T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
  Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
               rk+ +++keq   Lee F+++++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  OIT08133 219 RKKLRLSKEQSAYLEESFKEHHTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 273
               778899***********************************************98 PP
2HD-ZIP_I/II127.36.5e-41219308191
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                  +kk+rlskeq++ LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +l
     OIT08133 219 RKKLRLSKEQSAYLEESFKEHHTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLHKELQELR-AL 308
                  69*************************************************************************************9.55 PP
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    
MELGLSLGDS NPTATTTTAA AASSKSFFLS KNIKTSSSDQ NHSKKKRKGL GFCMALGINS  60
SNGKVQEQHD DDDEENPEKS HDDEDDEDDE HTSEEGNING NTPVQLDLLP LAPVPRRSFP  120
QSLHWSSDNG SSENGSSGNG GVPAARGFDV NRVPAAGTEE VSSPNSIASS FRMDFGLFRS  180
ANIIGNKRNS DSGGGNDGGE PERASSRASD EDENGVNTRK KLRLSKEQSA YLEESFKEHH  240
TLNPKQKLAL AKQLNLRPRQ VEVWFQNRRA RTKLKQTEVD CEYLKRCCET LTEENRRLHK  300
ELQELRALKS SNPFYMQLPA TTLTMCPSCE RVATTTSSAA APPTTAAGTT TSKAPTPIPT  360
TTTTTTTTTT SDSIPKAIPF LNSRPRFFPF NTTTNNPNHP HQSAAS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1218224TRKKLRL
2268276RRARTKLKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.13e-70HD-ZIP family protein