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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | OIT08177 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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| Family | C2H2 | ||||||||
| Protein Properties | Length: 172aa MW: 19739.3 Da PI: 9.8673 | ||||||||
| Description | C2H2 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
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| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | zf-C2H2 | 15.3 | 5.8e-05 | 26 | 48 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
ykC+ C++ F++ L H+++H
OIT08177 26 YKCSFCKREFRSAQALGGHMNVH 48
9********************99 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 172 aa Download sequence |
MEKMKFKENT HIEVWDSASI WPERDYKCSF CKREFRSAQA LGGHMNVHRR DRAKLRLLHY 60 SPSPSCDNTN PSPKKPNHNP SISSSSSSSS PRFNFTGSYL KGEIAKSTLS KTVSLGVKPP 120 ADFTKRNNEN RVWKKREFVT LDFNMGLLQT HAKEDNVDMD LDLDLELRLG YS |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G23130.1 | 2e-19 | C2H2 family protein | ||||
| Link Out ? help Back to Top | |
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| Ensembl | OIT08177 |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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