PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT08325
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 470aa    MW: 53078.9 Da    PI: 6.3515
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT08325genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS471.16.1e-144474671374
      GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101
               l++lLl+cA++v++g+le+a+ +L ++s+lasp+gd+mqR+a+yf+eALa r+++s++++ykal++++ s    se + + k+f+e +P+lk++ l++Nqa
  OIT08325  47 LIHLLLTCANHVAAGNLENANIALDQISQLASPNGDTMQRIASYFAEALADRILKSWPGIYKALHSTKLS--VLSEDILVKKMFFEYFPFLKVASLITNQA 145
               689*************************************************************999998..69*************************** PP

      GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEal 202
               I ea+ege++vHi+D+++s++lQW aLlq L++Rpegpp+lR+Tgv++    +ke le++++ L++ Ae+l++pf+f+  v+++le+l++e+Lrvk+gEal
  OIT08325 146 IIEAMEGEKMVHIVDLNASEPLQWRALLQDLSARPEGPPHLRVTGVHQ----QKEVLEQIAHVLTEEAEKLDIPFQFHQ-VVSKLENLDVEKLRVKTGEAL 241
               ************************************************....9**************************.799****************** PP

      GRAS 203 aVnlvlqlhrll.......................................................desvsleserdevLklvkslsPkvvvvveqeadh 248
               a+++v+qlh+ll                                                        ++++++ + d +L+++++lsPkv+vv+eq+++h
  OIT08325 242 AISSVMQLHTLLahedepqkksplglkhmnglhlqrallnqntlgdlleketanvfspgnesassspLSPTPSA-KMDGFLHALWGLSPKVMVVTEQDSNH 341
               ***********************************************************999886653333333.5899********************** PP

      GRAS 249 nsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgy 349
               n+++++er++e+l++y+alfd+le +l r+s er kvE++l+g+ei+n+vaceg er+erhe+l kW +r++ aGFk+vpls++a+ qa++ll+ ++ +gy
  OIT08325 342 NGTTLMERLSESLYFYAALFDCLEFTLQRTSLERLKVEKMLFGEEIKNIVACEGVERKERHEKLDKWFQRFDGAGFKNVPLSYYAMLQARRLLQSYSCEGY 442
               ***************************************************************************************************** PP

      GRAS 350 rveeesgslvlgWkdrpLvsvSaWr 374
               +++ee+g++v++W+dr+L+svSaWr
  OIT08325 443 KIKEENGCVVICWQDRALFSVSAWR 467
               ************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    
MLQDDGSSSV TSSSPLQNFP MMSLSPSFNS PYNWLKELKS EERGLYLIHL LLTCANHVAA  60
GNLENANIAL DQISQLASPN GDTMQRIASY FAEALADRIL KSWPGIYKAL HSTKLSVLSE  120
DILVKKMFFE YFPFLKVASL ITNQAIIEAM EGEKMVHIVD LNASEPLQWR ALLQDLSARP  180
EGPPHLRVTG VHQQKEVLEQ IAHVLTEEAE KLDIPFQFHQ VVSKLENLDV EKLRVKTGEA  240
LAISSVMQLH TLLAHEDEPQ KKSPLGLKHM NGLHLQRALL NQNTLGDLLE KETANVFSPG  300
NESASSSPLS PTPSAKMDGF LHALWGLSPK VMVVTEQDSN HNGTTLMERL SESLYFYAAL  360
FDCLEFTLQR TSLERLKVEK MLFGEEIKNI VACEGVERKE RHEKLDKWFQ RFDGAGFKNV  420
PLSYYAMLQA RRLLQSYSCE GYKIKEENGC VVICWQDRAL FSVSAWRCRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0GRAS family protein