PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT08352
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 214aa    MW: 25138.4 Da    PI: 8.2075
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT08352genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF50.52.6e-16447649
              HHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
    SRF-TF  6 ksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
              + +r+v +  R++ ++KKA ELSvLC++e+ +++fs++ k  ey
  OIT08352  4 ECRRSVVLKERLEALFKKADELSVLCGVEIGIVVFSPDKKNDEY 47
              679**********************************9886555 PP
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    
LVDECRRSVV LKERLEALFK KADELSVLCG VEIGIVVFSP DKKNDEYEWP SRDKFKQLLM  60
RFLDTPPVER LKKLTTNEMF LRKEMEKTVR KIDQQKIEEK EMEQLFKQLY FGEKTVFELD  120
KRQLIGVRNL AIKVKENAVE RRIQLKLQDQ RLLVPIDPVP LRVAPLNIED RHQHLQLPID  180
DPLALRLAPL DVQDQRFQLP VDDPLALRLA PPGN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26650.14e-16M-type_MADS family protein