PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT08418

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

HD-ZIP

Protein Properties

Length: 336aa MW: 38125.2 Da PI: 4.9022

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT08418	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.3	3.2e-19	97	150	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t++q++ Le+ F +++++ e++ +LAk+lgL+ rq+ +WFqNrRa++k OIT08418 97 KKRRLTDNQVQFLEKSFGEENKLEPERKVQLAKELGLQPRQIAIWFQNRRARWK 150 56689************************************************9 PP
2	HD-ZIP_I/II	128.5	2.7e-41	96	187	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 ekkrrl+++qv++LE+sF ee+kLeperKv+la+eLglqprq+a+WFqnrRAR+ktkqlEk++eaL+++yd+lk++ ++L ke+e+Lr+e+ OIT08418 96 EKKRRLTDNQVQFLEKSFGEENKLEPERKVQLAKELGLQPRQIAIWFQNRRARWKTKQLEKEFEALRNQYDNLKSDYNNLLKEKENLRAEVF 187 69**************************************************************************************9985 PP

Sequence ? help Back to Top
Protein Sequence Length: 336 aa Download sequence
MMAPGMLYSG GSGAFNFNGV LNQKQRVMSS SSSSSSTIAK EHLGSLFVPG CSSSYLGSSS 60 MVSFGRVNGG KRSFFDSFDQ EENEADEVGE YYHQAEKKRR LTDNQVQFLE KSFGEENKLE 120 PERKVQLAKE LGLQPRQIAI WFQNRRARWK TKQLEKEFEA LRNQYDNLKS DYNNLLKEKE 180 NLRAEVFQLT DKLLLKERKN GQLSLPDFQK HSDASPKETM ADPISRVKMS NVSARVLTLQ 240 QQEDLSSAKS DVLDSESPHY TDGVHSSFIE QGDSSYVFEP EPSNLSQDDE EKFDKTMLST 300 ANLLAKAEDD DYRVTSSNVS YFGFPVEDQG FGFWSY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	145	153	RRARWKTKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01470.1	2e-42	HD-ZIP family protein

Link Out ? help Back to Top
Ensembl	OIT08418