PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT08443
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 297aa    MW: 31579.7 Da    PI: 9.5916
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT08443genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH30.56.1e-10104129227
               -S---SGGGGTS--TTTTT-SS-SSS CS
   zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
               kt+lC+ f     Ck+Gd+C+FaHg+
  OIT08443 104 KTRLCNKFNTAEGCKFGDKCNFAHGE 129
               8***********************96 PP
2zf-CCCH35.71.5e-11264289127
               --S---SGGGGTS--TTTTT-SS-SSS CS
   zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
               +kt++C +fa+ G C +G+rC+FaHg+
  OIT08443 264 FKTKICENFAK-GSCTFGERCHFAHGE 289
               69*********.*************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    
MEFGGDRKRG RPHGPMNGNG TFKKSKQELE SIPTGIGSKL KPCTKFFSTS GCPFGEGCHF  60
LHYVPGGLKA VTQMLGSNPA LPAASRNSIA PLSFPDGSSP PAVKTRLCNK FNTAEGCKFG  120
DKCNFAHGEW ELGKPMAPLH EESRGMFQTH GRYGSRPETT PAGFGAAASF GSSATAKISV  180
DASLAGPIIG KGGVNSKQIS RVTGAKFSIR DHELDPNLRN IELEGTIDQI GQASQMVREL  240
IQSVTAKSGA PLMKNPSSTA TSNFKTKICE NFAKGSCTFG ERCHFAHGEE ELRRSGP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.19e-53C3H family protein