PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT08513
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 603aa    MW: 66180.4 Da    PI: 4.8115
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT08513genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3565.7e-1092356022373
      GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaI 102
                + LlecA+ +++++ e+a + L rl+e +s++gdp++R+ +yf+eAL +rl+ +++++ +++ + + +     e + ++k+f++++P+ kf+hltaNqaI
  OIT08513 235 LKSLLECAR-LADSEPENAVKSLIRLKESVSQQGDPTERVGFYFLEALYSRLSFQTDNIPSIFGTYTPE-----ELTLSYKAFNDACPYSKFAHLTANQAI 329
               578******.566689999999********************************999999888777775.....88999********************** PP

      GRAS 103 leavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgE 200
               lea+e++ r+Hi+Df+i +G+QW+a+lqaLa+R++g+p s+Ri g+ s   g   + +l +tg+rL++fA+ l+++fef++ + + +++l+ +++r++p+E
  OIT08513 330 LEATEKAMRIHIVDFGIVHGIQWAAFLQALATRSAGKPvSIRISGIPSVVLGnsPAASLLATGNRLRDFAKLLDLKFEFEP-ILTPVQELNESSFRIDPDE 429
               **********************************88777*********877788999************************.799**************** PP

      GRAS 201 alaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvace 301
               +laVn++lql++llde+    +   + L+l ksl+P +v++ e e+++n+  Fl+rf +al+yys++f+sl+ +l r+s er+ vEr +lgr+i  +v + 
  OIT08513 430 TLAVNFMLQLYNLLDETSVGVK---TALNLAKSLNPSIVTLGEYEVNLNNVGFLQRFKNALNYYSTIFESLDPSLTRDSPERVQVERLILGRRIAGAVGTD 527
               **************88777666...9************************************************************************999 PP

      GRAS 302 gae.rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv.lgWkdrpLvsvSaW 373
               +a  rre +e +e+W+e +e aGFk+v+ls++a++qak ll +++ s  y + ++   ++ l W+d+pL++vS+W
  OIT08513 528 EAGiRRECMEDKEHWKELMEGAGFKEVTLSHYAMSQAKILLWNYNySSSYGLIDSPPGFLsLAWNDKPLLTVSSW 602
               9888*****************************************9999998877665555************** PP
Sequence ? help Back to Top
Protein Sequence    Length: 603 aa     Download sequence    
MAAYMCTDSG NLMAIAQQVI KQKQQQEQLQ QQEQQQHQQF LGGVNPLCLS PWTGTHQSLT  60
NSPTLGYGGL TGGPGFTDPF QVVAGGTDGV EPGFQFPNLE HHSTGFRFTD FSGGPGGEFD  120
SDEWMESLIG GGDSTGSSNL QSGSYPWHTS SEFAALYGDP FSSCPNRLSI GSSPPPPLTS  180
DLNGVIFSET QKNLNPLQPW VPPSSSPPVV HKESKVASVD MRCSSPETFS SKPLLKSLLE  240
CARLADSEPE NAVKSLIRLK ESVSQQGDPT ERVGFYFLEA LYSRLSFQTD NIPSIFGTYT  300
PEELTLSYKA FNDACPYSKF AHLTANQAIL EATEKAMRIH IVDFGIVHGI QWAAFLQALA  360
TRSAGKPVSI RISGIPSVVL GNSPAASLLA TGNRLRDFAK LLDLKFEFEP ILTPVQELNE  420
SSFRIDPDET LAVNFMLQLY NLLDETSVGV KTALNLAKSL NPSIVTLGEY EVNLNNVGFL  480
QRFKNALNYY STIFESLDPS LTRDSPERVQ VERLILGRRI AGAVGTDEAG IRRECMEDKE  540
HWKELMEGAG FKEVTLSHYA MSQAKILLWN YNYSSSYGLI DSPPGFLSLA WNDKPLLTVS  600
SWH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.10.0GRAS family protein