PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT08543

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB

Protein Properties

Length: 256aa MW: 29521.3 Da PI: 7.9823

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT08543	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	45.5	1.8e-14	14	63	1	48
TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEde+l+++ ++G+ +W t +++ g++R +k+c++rw++yl OIT08543 14 RGKWSPEEDEILKNYLLKHGTTagNWITLPHRAGLKRWGKSCRLRWLNYL 63 89******************************99**********97 PP
2	Myb_DNA-binding	52.8	9.3e-17	70	112	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g++T+eEd ++ + +qlG++ W+ Ia++++ gRt++++k++w++ OIT08543 70 GNFTQEEDNIICSLYTQLGSR-WSVIASKLP-GRTDNDVKNHWNT 112 79*****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 256 aa Download sequence
MGRTPCCDKT KVKRGKWSPE EDEILKNYLL KHGTTAGNWI TLPHRAGLKR WGKSCRLRWL 60 NYLRPDIKLG NFTQEEDNII CSLYTQLGSR WSVIASKLPG RTDNDVKNHW NTKLKKKLLA 120 TNANPTNNFD DSKQVFHSSS MVPKEEEQQA VYSPIQFPVP NWNSGFSSIL DNNKSMVQHD 180 EKQFPLSRFR QDYFKISTSR EGSMIFGSSS VEMHENIDLA WFNTFEGFPM DDEIMGAGLW 240 TQQSVLEDID FPVTFS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37780.1	9e-56	MYB family protein

Link Out ? help Back to Top
Ensembl	OIT08543