PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT08607

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

M-type_MADS

Protein Properties

Length: 194aa MW: 21905.1 Da PI: 8.8428

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT08607	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	33.7	4.7e-11	22	50	21	49
HHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 21 lKKAeELSvLCdaevaviifsstgklyey 49 l KA+EL++LC+ae+a+++fs+ k+y + OIT08607 22 LQKASELCTLCGAEIALVVFSPGKKVYSF 50 68*************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 194 aa Download sequence
MAKRSKGRQK VDMVKMHNES NLQKASELCT LCGAEIALVV FSPGKKVYSF GHPCVDSVVD 60 RFLTRNSPPN NDHNQLIVAH RNASVRDLNM ELMNIEGILQ MEKNRGEALQ ARKRDNGHWW 120 EAPIEELNFF QLQQLKEAME CIKKKVEREA QNQQMVTGNA FPFLTFGSAL APTDARARSS 180 YGSCGSFPFC LTKN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60440.1	2e-48	M-type_MADS family protein

Link Out ? help Back to Top
Ensembl	OIT08607