PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT08620

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

TCP

Protein Properties

Length: 180aa MW: 19889.4 Da PI: 7.902

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT08620	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	84.3	2.9e-26	17	156	6	118
TCP 6 drhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa...sec.eaesssssasnsssg.............. 88 +r+ ++h kv+g+dRR+Rl+ +ca r+F L+++LG+++ + tieWLl qa+ +i ++ ++s+ +++ ++ss s+s+++++ OIT08620 17 TRTRDRHLKVNGKDRRIRLPTSCAQRVFSLTEKLGHKTVGCTIEWLLMQAESSINAILAKKTSALpspERVpPVVESSISTSTHRNRnglppfvfchglel 117 79******************************************************999944433222223533333333333333347888888888888 PP TCP 89 ...................kaaksaakskksqksaasalnlakesraka 118 + ++ +++ ++++ n es++k OIT08620 118 gdmefsreeierfastntsS---ESV-GSSLPAQH---MN---ESNEKN 156 88888877665554432210...111.11111111...11...222111 PP

Sequence ? help Back to Top
Protein Sequence Length: 180 aa Download sequence
MDASPPPPPP PGNRPSTRTR DRHLKVNGKD RRIRLPTSCA QRVFSLTEKL GHKTVGCTIE 60 WLLMQAESSI NAILAKKTSA LPSPERVPPV VESSISTSTH RNRNGLPPFV FCHGLELGDM 120 EFSREEIERF ASTNTSSESV GSSLPAQHMN ESNEKNCSSE VEEKIGANEE KKNATCVQFY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58100.1	6e-19	TCP family protein

Link Out ? help Back to Top
Ensembl	OIT08620