PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT08887
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 156aa    MW: 17383.1 Da    PI: 10.7386
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT08887genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH52.21.1e-162369455
              HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
       HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
               hn+ ErrRRdriN+++  L++l+P+a      K +Ka++L ++++Y+k+Lq
  OIT08887 23 VHNQSERRRRDRINEKMKALQKLVPNA-----SKTDKASMLDEVIKYLKQLQ 69
              5*************************9.....7******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    
ENKEEERETK GSNTLRRSRT AAVHNQSERR RRDRINEKMK ALQKLVPNAS KTDKASMLDE  60
VIKYLKQLQA QIQLISSARN MESQMMMQLS LGMQLPHIQM PLLARMGTGV NLDMTSGMLN  120
NMTANLARAA AAAATTPHQS LNAPFIYPTS IATSCP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12833ERRRRD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.12e-30bHLH family protein