PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT19032
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family AP2
Protein Properties Length: 265aa    MW: 29234.7 Da    PI: 7.6799
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT19032genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP238.23.7e-1298145152
       AP2   1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkk 52 
               s+y+GV+ +k  g+W+A+       g    +k+++lg f+ + eAa+a+++a+ k
  OIT19032  98 SKYRGVTLHK-CGQWEAR---M---GqllGKKYIYLGLFDCEIEAARAYDKAAIK 145
               89********.7******...5...334336**********99*********976 PP
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    
MNPELYLYIV FLQFIPKSIC GYLPPISVKT MLRWGFDTAH TAARAYDRAA IKFRGLDADI  60
NFNISDYGDD LKQMNNFSNE EFVHILRCQS NGFSRGSSKY RGVTLHKCGQ WEARMGQLLG  120
KKYIYLGLFD CEIEAARAYD KAAIKSSGKE AVTNFELSTY EGVLTSEAHI RGTTRNLDLN  180
LGISPSSYAD NQHGNTSQIG NFQGQHGSNG LPEHRRQDQN TNGGSPTVPL FSTAASSGFE  240
NSAITAPSAA IHQLHFGSGA LPYHH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.14e-64AP2 family protein