PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT19278

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

LBD

Protein Properties

Length: 243aa MW: 25801.2 Da PI: 5.316

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT19278	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	56	1.2e-17	41	90	1	50
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalp 50 +CaaCk+l r+C ++Cvlapyfp ++p kf +h++FGasn++k l+ OIT19278 41 PCAACKILCRRCIDKCVLAPYFPPTEPLKFTTAHRVFGASNIIKSLQVCT 90 7*******************************************999765 PP

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence
MDCINKTTII TTSQTLSSSS FSAGGSTAAP PSSPPVVPIT PCAACKILCR RCIDKCVLAP 60 YFPPTEPLKF TTAHRVFGAS NIIKSLQVCT QRSWKRPYGV GLLVGGLDES GAHLYYNCPS 120 GNYFEYQAFA IGSRSQAAKT YLERRYGSFT DSSRGSLLKD ALFALRETLQ GEKLTSTNCT 180 VAVLGIGEPF HMLDKDTIQG LINEFELAGE EAPAASTDAA ADAESAVPEA VAPTNEGAAP 240 MDI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28500.1	2e-24	LBD family protein

Link Out ? help Back to Top
Ensembl	OIT19278