PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT19356
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family FAR1
Protein Properties Length: 236aa    MW: 27423 Da    PI: 8.2789
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT19356genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR154.73.3e-1736120289
      FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                Yn+YA   GFsvrk  ++ + rn+eit+  f Cs+eg++++ +   ++++r+r e r+gC  ++k k + +g+wev +++  H+H +
  OIT19356  36 AYNSYAVAKGFSVRKGPKTFN-RNKEITRCLFLCSCEGQSDKISPF-QERKRQRLEYRCGCLDRIKFKIS-NGTWEVCEFNDVHSHLI 120
               5***************99888.8888**************999888.99999****************99.***************75 PP
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    
MQLMNSTMIH NVYNIDKNFA FNIGMKFGFE EESYNAYNSY AVAKGFSVRK GPKTFNRNKE  60
ITRCLFLCSC EGQSDKISPF QERKRQRLEY RCGCLDRIKF KISNGTWEVC EFNDVHSHLI  120
IEENLRYFIQ SSRKLTSATK NIIGSMVDDA IRAKKVVRYL QNEAGGVENA GFTEQDAHNF  180
IQAHKRNMIS SGDAQTLVNH FMHLQSEDSN FFYFFQVDED GRLCNFFGRD SISRLQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.16e-22FAR1 family protein