PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT19423

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

LSD

Protein Properties

Length: 154aa MW: 16437.2 Da PI: 6.682

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT19423	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	42.2	1.4e-13	28	52	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr+lL YP GA+sV+Ca+C++V OIT19423 28 CSGCRNLLLYPVGATSVCCAVCNAV 52 ************************9 PP
2	zf-LSD1	37.9	2.9e-12	67	91	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cgg +tlL+Y rGA+sV+C++C+tV OIT19423 67 CGGRHTLLMYIRGATSVQCSCCHTV 91 9999********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 154 aa Download sequence
MPVPLAPYPT PPTPFTPPAN GTQSQLVCSG CRNLLLYPVG ATSVCCAVCN AVTAVPPPGT 60 EMAQLVCGGR HTLLMYIRGA TSVQCSCCHT VNLAMEGSTC ELWQLPHAVD VPIWGTISEM 120 CSVQFCDSCR GKYKILFSIK SLSFYAAAND ELVF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32540.3	2e-33	LSD family protein

Link Out ? help Back to Top
Ensembl	OIT19423