PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT19454
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 196aa    MW: 22618.4 Da    PI: 10.2187
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT19454genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF67.51.3e-211663249
              ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
    SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
              +ie k   qvtfskRr g++KKA+EL++LC++e a+i+fs+  k+y +
  OIT19454 16 KIEMKNHLQVTFSKRRSGLFKKASELCTLCGVEFAIIVFSPAKKVYSF 63
              68889999**************************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    
MAKNPSMGRK KIKIAKIEMK NHLQVTFSKR RSGLFKKASE LCTLCGVEFA IIVFSPAKKV  60
YSFGHPNVES IIDRFLSRNP HPIISNRLQF VEGQRHVNVL NLNLKLTQIL VELEVEKKKG  120
ETLNQMRKTR QKQCWWEAPI CELALHELEQ LKDSMEELNK NVTTHQNSIY SSLIANGVGI  180
FDNYDIKPVR CFKLHS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.15e-51M-type_MADS family protein