PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT19524

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB

Protein Properties

Length: 246aa MW: 28177.9 Da PI: 7.196

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT19524	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24.2	8e-08	24	64	3	41
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqck 41 WT+eE +++ a + + + +W+ +a++++ g+++ ++ OIT19524 24 EWTKEENKKFESALAIYDEKtpnRWSMVAAMIP-GKSALDVM 64 7******************************.*98875 PP
2	Myb_DNA-binding	40.4	6.9e-13	121	165	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ +++ + +++G+g+W+ I+r + +t+ q+ s+ qky OIT19524 121 PWTEEEHRRFLLGLEKYGKGDWRNISRNFVISKTPTQVASHAQKY 165 8***************************789*********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence
METLFPAAFL PNSNWMMQQI KSTEWTKEEN KKFESALAIY DEKTPNRWSM VAAMIPGKSA 60 LDVMMQYKEL VADVSDIEAG LVPTPRHFAS SFTLEFIDHR EIHTFSKRGK SCDQERKKGV 120 PWTEEEHRRF LLGLEKYGKG DWRNISRNFV ISKTPTQVAS HAQKYYLRQL PGGKDKKRPS 180 IHDITTVHLT DDELLNNSNN KSMCDETYSK APLQNSTSTG DVLIGCWNDS NDKALMTYGS 240 LYDNLV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38090.1	3e-86	MYB family protein

Link Out ? help Back to Top
Ensembl	OIT19524