PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT19527
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 226aa    MW: 26344.7 Da    PI: 8.5849
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT19527genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.91.7e-184396457
              -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
  Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
              + ++++eq+++Lee F +++++  e++ +LAk+lg++ rq+ +W+qNrRa++k+
  OIT19527 43 KKRLNQEQVKRLEESFDSTKKLEPEQKLQLAKELGVPPRQIAIWYQNRRARWKN 96
              56799***********************************************95 PP
2HD-ZIP_I/II110.98.8e-3642133293
  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                  +k+rl++eqvk LEesF++++kLepe+K +la+eLg+ prq+a+W+qnrRAR+k++ lE dy+aL++++d++ +e++++eke+e+Lr elk+
     OIT19527  42 NKKRLNQEQVKRLEESFDSTKKLEPEQKLQLAKELGVPPRQIAIWYQNRRARWKNQSLELDYNALQHKLDTVLAEKRKIEKENERLRGELKK 133
                  79*************************************************************************************99986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    
MQQHKSITSF HYKFQTLSHF SNMNNFLNSQ YLHKHQSILN HNKKRLNQEQ VKRLEESFDS  60
TKKLEPEQKL QLAKELGVPP RQIAIWYQNR RARWKNQSLE LDYNALQHKL DTVLAEKRKI  120
EKENERLRGE LKKVNEMFVA CKKTQGHEET QGLIPLNAAN SISSGCEEGV VSCSSFQEDV  180
SCSLVKNNSE SNLQFDELYA CLMGAEEGSN CRLSWQNGKD LWVWKN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.15e-29HD-ZIP family protein