PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT19530

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 255aa MW: 28678.9 Da PI: 7.9401

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT19530	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.4	5.3e-13	56	102	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN +++Lr llP+ K +Ka+ L +Av+++++L OIT19530 56 KSHSEAERRRRKRINGHLATLRNLLPNT-----IKTDKASLLAEAVRCVREL 102 69***********************8.....6************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence
MINHSFPSFY ELGGCSDSYN FLHGIINSSA EMFNVESSSV VSPRSMAEAK AIAANKSHSE 60 AERRRRKRIN GHLATLRNLL PNTIKTDKAS LLAEAVRCVR ELKKTTSELG ATMSEDDDDT 120 DDFMTYMGSN DQTTMKKFMF PCESDELNLS YCNSNNSGTL LVKATICCED RPEIMMDLRR 180 ALSTVQGKII RAEMATVGGR IKCILWVQML ENGCREEGLV QLRRALKVVM DKANFLQQNM 240 GQDLLGNKRP RLYHC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68810.1	2e-36	bHLH family protein

Link Out ? help Back to Top
Ensembl	OIT19530