PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT19618

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB

Protein Properties

Length: 421aa MW: 47395.5 Da PI: 7.059

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT19618	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.7	4.7e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l++ ++++G g+W+++++ g+ R++k+c++rw +yl OIT19618 14 KGLWSPEEDEKLINHITKYGYGCWSSVPKLAGLQRCGKSCRLRWINYL 61 678*******************************************97 PP
2	Myb_DNA-binding	44	5.1e-14	67	109	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 rg ++ eE+ l++++++ lG++ W+ Ia++++ gRt++++k+ w+ OIT19618 67 RGTFSLEEENLIIELHAVLGNK-WSQIAARLP-GRTDNEIKNLWN 109 899*****************.*****.*******998 PP

Sequence ? help Back to Top
Protein Sequence Length: 421 aa Download sequence
MGRHSCCYKQ KLRKGLWSPE EDEKLINHIT KYGYGCWSSV PKLAGLQRCG KSCRLRWINY 60 LRPDLKRGTF SLEEENLIIE LHAVLGNKWS QIAARLPGRT DNEIKNLWNS SIKKKLRQKG 120 IDPNTHKPLS EVENEEKVSA ISKNNEKASE GSSELNFFEA HENSNYGIET EKPKPSSATT 180 MDRYSNHMSA AVAPPTHEFF LNRFVNTHET STTSCNKPLD LASYLSFQQL NYGSNIGLSM 240 SPNTNHLLFN SNNPKNSEMV SHQFNSNMTT NDNILPSISN SILTSPIAAA SNNSIGTFTS 300 NGSSTSIDQL QRNSSFFDNN AFSWGAADCG KSEKEANIHP SETDPEDIKW SEYLHTQFLP 360 GNSIHNHQIT QELYSEKSGT QFATEGSLTW LQNQQQQPSL QTADLYNKHF QRIPDAFGQF 420 S

Sequence ? help Back to Top

Protein Sequence Length: 421 aa Download sequence

MGRHSCCYKQ KLRKGLWSPE EDEKLINHIT KYGYGCWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGTF SLEEENLIIE LHAVLGNKWS QIAARLPGRT DNEIKNLWNS SIKKKLRQKG  120
IDPNTHKPLS EVENEEKVSA ISKNNEKASE GSSELNFFEA HENSNYGIET EKPKPSSATT  180
MDRYSNHMSA AVAPPTHEFF LNRFVNTHET STTSCNKPLD LASYLSFQQL NYGSNIGLSM  240
SPNTNHLLFN SNNPKNSEMV SHQFNSNMTT NDNILPSISN SILTSPIAAA SNNSIGTFTS  300
NGSSTSIDQL QRNSSFFDNN AFSWGAADCG KSEKEANIHP SETDPEDIKW SEYLHTQFLP  360
GNSIHNHQIT QELYSEKSGT QFATEGSLTW LQNQQQQPSL QTADLYNKHF QRIPDAFGQF  420
S

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09540.1	1e-105	MYB family protein

Link Out ? help Back to Top
Ensembl	OIT19618