PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT19713

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

FAR1

Protein Properties

Length: 376aa MW: 42659.8 Da PI: 6.5834

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT19713	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	47.1	8.1e-15	83	162	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +fY+e+A+ GF ++k++s+k+ + + ++ C ++ k+++++ +++r +C+a+++ +e++g w+v+k++++HnH+l p OIT19713 83 DFYKEHARLSGFCIVKRTSNKK-GGDIVRYVQYGCDRSRKPRNKH----------VTKRKNCRARINGILEENGSWRVSKVVKKHNHQLEP 162 6**************99998.66668999*998887765..........5599***************************975 PP

Sequence ? help Back to Top
Protein Sequence Length: 376 aa Download sequence
MNEDESIDID SDGNFNDREN PVDDAAAPAA AADDDDDDYD GHYLEEEGEV GEDREMPNEF 60 NEEDLIIGPI TGMRFSSKDV LFDFYKEHAR LSGFCIVKRT SNKKGGDIVR YVQYGCDRSR 120 KPRNKHVTKR KNCRARINGI LEENGSWRVS KVVKKHNHQL EPALSRLMAG HRSLSKSLKR 180 TLAAKDIAGL RPSKNIRVAE VLAGGPENLG CTPKDCRNYI LNSRKLQLQE GDAQSLPKFF 240 SDMQQKDREF YYSVDVDSFG RLRNVVWVYS HSKVAYEEFH DVICLDTTYL VNRYNMSFAS 300 FVGVNQHRQS ILLGCALIVE SLLRLFGSDV YDMQRKGDLN CSNDTTIEDK SIPQGLLARN 360 HTKTVPYSKH ILGSNC

Sequence ? help Back to Top

Protein Sequence Length: 376 aa Download sequence

MNEDESIDID SDGNFNDREN PVDDAAAPAA AADDDDDDYD GHYLEEEGEV GEDREMPNEF  60
NEEDLIIGPI TGMRFSSKDV LFDFYKEHAR LSGFCIVKRT SNKKGGDIVR YVQYGCDRSR  120
KPRNKHVTKR KNCRARINGI LEENGSWRVS KVVKKHNHQL EPALSRLMAG HRSLSKSLKR  180
TLAAKDIAGL RPSKNIRVAE VLAGGPENLG CTPKDCRNYI LNSRKLQLQE GDAQSLPKFF  240
SDMQQKDREF YYSVDVDSFG RLRNVVWVYS HSKVAYEEFH DVICLDTTYL VNRYNMSFAS  300
FVGVNQHRQS ILLGCALIVE SLLRLFGSDV YDMQRKGDLN CSNDTTIEDK SIPQGLLARN  360
HTKTVPYSKH ILGSNC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	9e-36	FAR1 family protein

Link Out ? help Back to Top
Ensembl	OIT19713