PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT19807
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 175aa    MW: 20392.1 Da    PI: 9.8899
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT19807genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF69.92.2e-22754249
              ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
    SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
              +ien+ nrqvtfskRrng++KKA+EL v+++aev +i+fs+ +k y +
  OIT19807  7 KIENQNNRQVTFSKRRNGVFKKANELVVMTGAEVGLIVFSPANKSYSF 54
              79*****************************************99987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    
MSTRLAKIEN QNNRQVTFSK RRNGVFKKAN ELVVMTGAEV GLIVFSPANK SYSFGHPNIN  60
ETINKYVGEE KPSSPSSPGI DKYVEMFRKA NSRELNTRLN YLQDQLEFAL NLKSKLKEIN  120
KNVESQQEWF RDPIEKMNYT EASMLKERLE DLLLKVKSYG TERGYSYENG RWKHE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.11e-28M-type_MADS family protein