PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT19829
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 414aa    MW: 45019.9 Da    PI: 5.9483
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT19829genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.49.3e-12351396655
               HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
       HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
               +++Er RR +i +++ +L++l+P+     +k  + a++L  Av+YIk+L+
  OIT19829 351 SIAERVRRTKISDRMRRLQDLVPNM----DKQTNTADMLDFAVDYIKELE 396
               689*********************7....688***************996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 414 aa     Download sequence    
MDHSRFQQQP VNSGLTRYKS APSSYFSSLL SSTPSSDGGT SITSGGCGYT RDDFSQLKNS  60
RGSNSSDIEQ VFAKFVASIG NQGSNSGDFS STQQIQDNPM SNMNVRSDFI VKQEPEMNYQ  120
NLAPQHIDNS KAATSLEAVD NSFTFMTSVN STRVSPVNIG GRVGAGAGGG NTNLTRYNSS  180
PAGFFDLISI ENEYGAMRGV GSYGTGANAT TETSLSTPKR FKTQVGISSG KPPASPGLMT  240
PISEIGDKVV EEKSIGDEHK NDESCITDFP IPSWEDSHIL SDDFLKAEDI EIEPFSNVNA  300
SDNQNSEGLS RLPIPLSHHL SLPTSTLEKL LQDSTPLNVR AKRGCATHPR SIAERVRRTK  360
ISDRMRRLQD LVPNMDKQTN TADMLDFAVD YIKELEKQVK ILAEKRAKCT CTNK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.18e-46bHLH family protein