PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT19834
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 177aa    MW: 20623.4 Da    PI: 9.2197
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT19834genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF565e-181565151
              S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
    SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
              k ie+k  r+vtfskR++ ++ KAeE S+ ++a++ v++fs++gk y yss
  OIT19834 15 KYIESKEARYVTFSKRKASLFRKAEEFSTVTGADIGVLLFSPSGKPYSYSS 65
              579**********************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    
MARRTSRGRQ KIEMKYIESK EARYVTFSKR KASLFRKAEE FSTVTGADIG VLLFSPSGKP  60
YSYSSTSVEK ITEKFREWKQ QNIDEGKSSV FQAFDDLCKD IQDENEKGKS RELWYKVMYP  120
GAEIPPDKER LEKLVEMKLR LDKIDEAAKN HIRTERLKFD LNVVPEYEVG ESSGTHH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.12e-20M-type_MADS family protein