PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT19841

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

M-type_MADS

Protein Properties

Length: 177aa MW: 20480.3 Da PI: 9.5148

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT19841	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	49.6	4.9e-16	16	62	2	48
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48 +e+k r+vtfskR++ ++ KAeE S+ ++a++ v++fs++gk OIT19841 16 YVESKEARYVTFSKRKASLFRKAEEFSTVTGADIGVLLFSPSGKPCS 62 5799***************************************9655 PP

Sequence ? help Back to Top
Protein Sequence Length: 177 aa Download sequence
MARRTSRGRQ KIEMKYVESK EARYVTFSKR KASLFRKAEE FSTVTGADIG VLLFSPSGKP 60 CSYTSTSVEK ITEKFREWKQ QNADEGKLSV FQAFDDLCKD IQDENEKGKS RELRYKVMYP 120 GAEIPPDKER LEKLVEMKLR LDKINEAAKN HIRVERLKID LNVVPEYEVG ESSGTHH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34440.1	1e-19	M-type_MADS family protein

Link Out ? help Back to Top
Ensembl	OIT19841