PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT19870
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 240aa    MW: 26450.1 Da    PI: 7.8075
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT19870genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.12.8e-1256102354
               HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
       HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
               ++h+e+ErrRR+riN  +++Lr l+P++      K++Ka+ L +++  +k+L
  OIT19870  56 KSHSEAERRRRERINAHLATLRNLVPSS-----DKMDKAALLAEVICQVKQL 102
               58*************************8.....7**********99999988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    
MNCQISGNLG GFYENEAKGV SQSLVLDSEK GELVKASGRV GKKTGKSEGK SIAALKSHSE  60
AERRRRERIN AHLATLRNLV PSSDKMDKAA LLAEVICQVK QLKETATHVS ESFFIPLDSD  120
EIRVETIAEN AGDGTCLFRA SICCEYRPEL LSDLREVINS LHVNLVKSEI STLGSRVKNI  180
FVFTNVIDGG YANIEVREIL LTSARQAFSS VLDKVSAFPE YSTYPNKRQR ISCFDTSSLL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16267ERRRRE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.13e-36bHLH family protein