PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT20233
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 200aa    MW: 22233 Da    PI: 6.2814
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT20233genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.96.1e-191767155
       AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
              + y+GVr ++ +g+Wv+eIr+p++   + r++lg++ t+e+Aa+a++ a++++++
  OIT20233 17 PVYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTYPTPEMAARAHDVAALSIKK 67
              68*****998.**********843...6**********************99876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    
MTKRKMKQST NTGNRHPVYR GVRMRSWGKW VSEIREPRKK SRIWLGTYPT PEMAARAHDV  60
AALSIKKNSS ILNFPHLVNS LPRPISLSPR DVQAAAAKAA SMEEPIISSI SSSNSSSSSD  120
CTLETITSAS DVELGEIIEL PCLEGSFDSN ESKTELRLSD SVDGWLYAPW WAPDSDFGEY  180
LLEQDAVGES LILSNFEKQK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.12e-55ERF family protein