PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT20264

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 464aa MW: 52236.4 Da PI: 8.3064

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT20264	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.5	0.0001	11	32	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ C+ksF++ +L H+r+H OIT20264 11 VCKFCNKSFNSGRSLGGHMRSH 32 6********************9 PP
2	zf-C2H2	14.4	0.00011	92	111	2	21
EETTTTEEESSHHHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrHir 21 +C+ CgksF ++ L H++ OIT20264 92 VCKECGKSFQSWKALFGHMK 111 6******************7 PP
3	zf-C2H2	11.2	0.0012	372	394	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+C k Fs+ L H r+H OIT20264 372 HECPICFKIFSSGQALGGHKRSH 394 79******************999 PP

Sequence ? help Back to Top
Protein Sequence Length: 464 aa Download sequence
MGEDQEILKR VCKFCNKSFN SGRSLGGHMR SHMINSTDGN TTRKMLPNLD MGTEAAGDQS 60 ANYVLRENPK KTSKFAESSE EDTLLQNQKN KVCKECGKSF QSWKALFGHM KCHSERISSM 120 NNSVEQDSWN SANANNHKEL VMDSQSDTEA AAPNKKKRST RRLKRYMANT ASSSLTVAYN 180 ASPCISEIEH DQLQEEVAMS LILLSKDVGN WVGQNHVIEC SDNNYQPHQN EKDGELVKLK 240 MVKNGKTEQG ESSKSNGQKR DKSQVPTDDE KKKKIKVDNE NRVVEELVKG CDLTEDFNSK 300 KIKFECSTCN KSFHSYQALG GHRASHKNIK GENSNIENKG VDHIKIIKNG SNESAINEKI 360 ETNSRSKKLK NHECPICFKI FSSGQALGGH KRSHLIAEAK RNNNQAVEIV QKPIPEIRNF 420 LDLNLPAPVE EENVLDSSSE NIGFQQWWME NSHKHEQLLG LISN

Sequence ? help Back to Top

Protein Sequence Length: 464 aa Download sequence

MGEDQEILKR VCKFCNKSFN SGRSLGGHMR SHMINSTDGN TTRKMLPNLD MGTEAAGDQS  60
ANYVLRENPK KTSKFAESSE EDTLLQNQKN KVCKECGKSF QSWKALFGHM KCHSERISSM  120
NNSVEQDSWN SANANNHKEL VMDSQSDTEA AAPNKKKRST RRLKRYMANT ASSSLTVAYN  180
ASPCISEIEH DQLQEEVAMS LILLSKDVGN WVGQNHVIEC SDNNYQPHQN EKDGELVKLK  240
MVKNGKTEQG ESSKSNGQKR DKSQVPTDDE KKKKIKVDNE NRVVEELVKG CDLTEDFNSK  300
KIKFECSTCN KSFHSYQALG GHRASHKNIK GENSNIENKG VDHIKIIKNG SNESAINEKI  360
ETNSRSKKLK NHECPICFKI FSSGQALGGH KRSHLIAEAK RNNNQAVEIV QKPIPEIRNF  420
LDLNLPAPVE EENVLDSSSE NIGFQQWWME NSHKHEQLLG LISN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	155	164	KKKRSTRRLK
2	271	303	KKKKIKVDNENRVVEELVKGCDLTEDFNSKKIK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26590.1	7e-27	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OIT20264