PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT20415

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 184aa MW: 21326.7 Da PI: 10.4759

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT20415	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.1	3.2e-05	65	85	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C+ C+k F r nL+ H r H OIT20415 65 CEVCNKGFQREQNLQLHRRGH 85 *******************88 PP
2	zf-C2H2	16.4	2.5e-05	140	162	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +t+ OIT20415 140 FKCEKCSKKYAVQSDWKAHTKTC 162 89*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 184 aa Download sequence
MNIQQEVLLQ QQQYSLAPSS SMAQNQAQAA PTKKRRNQPG TAPYPDAEVI ALSPKTLMAT 60 NRFLCEVCNK GFQREQNLQL HRRGHNLPWK LKQKNTKEVV KRKVYLCPEI TCVHHEISRA 120 LGDLTGIKKH YFRKHGEKKF KCEKCSKKYA VQSDWKAHTK TCGTREYRCD CGTLFSRASF 180 RFPR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02080.1	2e-83	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OIT20415