PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT20528

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

HD-ZIP

Protein Properties

Length: 299aa MW: 34201.1 Da PI: 5.6506

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT20528	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56	6.9e-18	86	139	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe +++ e++ +LA+ lgL+ rq+ +WFqNrRa++k OIT20528 86 KKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWK 139 456899***********************************************9 PP
2	HD-ZIP_I/II	130.6	6.3e-42	85	177	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ekkrrl+ eqvk+LE++Fe +kLeperK++lar+Lglqprq+a+WFqnrRAR+ktkqlEkdye+Lkr+++a+k+en++L++++++L++e+++ OIT20528 85 EKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYEVLKRQFEAIKAENDALQSQNQKLHAEVMA 177 69**************************************************************************************99875 PP

Sequence ? help Back to Top
Protein Sequence Length: 299 aa Download sequence
MTCTNEMDFF PANFMLQTSH EDEHQPSTSL TPILPSCSPQ DFHGIASFLG KRSMSFSGME 60 ANNNNCEENH NGEDDLSDDG SQAGEKKRRL NMEQVKTLEK NFELGNKLEP ERKMQLARAL 120 GLQPRQIAIW FQNRRARWKT KQLEKDYEVL KRQFEAIKAE NDALQSQNQK LHAEVMALKN 180 RDQPTESINL NKETEGSCSN RSENSSEIKL DISRTPAIDS PLSTHHPITS RPFFPPSIRP 240 NNNGVAQLFN MNPNSISRPD LKLMDQNSTV KEESSLSNMF CGIDDQTAFW PWLEQQHFN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	134	142	RRARWKTKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69780.1	1e-124	HD-ZIP family protein

Link Out ? help Back to Top
Ensembl	OIT20528