PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT20550

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB

Protein Properties

Length: 426aa MW: 48001.2 Da PI: 7.9784

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT20550	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.2	8e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l++ ++++G g+W+++++ g+ R++k+c++rw +yl OIT20550 14 KGLWSPEEDEKLIKHITKYGHGCWSSVPKLAGLQRCGKSCRLRWINYL 61 678*******************************************97 PP
2	Myb_DNA-binding	45.8	1.4e-14	67	109	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 rg +++eE+ l++++++ lG++ W+ Ia +++ gRt++++k+ w+ OIT20550 67 RGTFSQEEENLIIELHAVLGNK-WSQIATRLP-GRTDNEIKNLWN 109 899*****************.*****.*******998 PP

Sequence ? help Back to Top
Protein Sequence Length: 426 aa Download sequence
MGRHSCCYKQ KLRKGLWSPE EDEKLIKHIT KYGHGCWSSV PKLAGLQRCG KSCRLRWINY 60 LRPDLKRGTF SQEEENLIIE LHAVLGNKWS QIATRLPGRT DNEIKNLWNS SIKKKLRQRG 120 IDPNTHKPLS EVENEEKASA NSNNKNTDKV SESSNNDQLN FVEAAHENGF SIEKPKPSSM 180 TIMDRYPLIE TNNIAPPTHE FFTTNCKSPD FANYLSFQHL NNYTPNTNIL FSNKNSAHDM 240 VSDHQFNCSL SPMSNSMLIT SPLARIKSPS LTTLPPTDSS FNINKFQNWE ACTISSNSNG 300 SSNSIELQSN CSFFDNNAAA FAWGSSTAAT DGSGKPEREE IKWSEYLQTP FSLGSNTIQN 360 HQISSQHQAD LYNNETKSET QFMTQGSLGT TTTWLQNQPQ QSSLQTANLY NSNTYQRLPA 420 AFGQFS

Sequence ? help Back to Top

Protein Sequence Length: 426 aa Download sequence

MGRHSCCYKQ KLRKGLWSPE EDEKLIKHIT KYGHGCWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGTF SQEEENLIIE LHAVLGNKWS QIATRLPGRT DNEIKNLWNS SIKKKLRQRG  120
IDPNTHKPLS EVENEEKASA NSNNKNTDKV SESSNNDQLN FVEAAHENGF SIEKPKPSSM  180
TIMDRYPLIE TNNIAPPTHE FFTTNCKSPD FANYLSFQHL NNYTPNTNIL FSNKNSAHDM  240
VSDHQFNCSL SPMSNSMLIT SPLARIKSPS LTTLPPTDSS FNINKFQNWE ACTISSNSNG  300
SSNSIELQSN CSFFDNNAAA FAWGSSTAAT DGSGKPEREE IKWSEYLQTP FSLGSNTIQN  360
HQISSQHQAD LYNNETKSET QFMTQGSLGT TTTWLQNQPQ QSSLQTANLY NSNTYQRLPA  420
AFGQFS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09540.1	5e-96	MYB family protein

Link Out ? help Back to Top
Ensembl	OIT20550