PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT20601
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family LBD
Protein Properties Length: 83aa    MW: 9383.65 Da    PI: 8.3187
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT20601genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260108.64.8e-341482169
    DUF260  1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAeara 69
              +CaaCk+lrrkC+++Cv+apyfp +qp+kfa++hk+FGasnv+kll++l++++reda++sl+yeA++r+
  OIT20601 14 PCAACKFLRRKCQPECVFAPYFPTDQPQKFAYAHKIFGASNVTKLLNELQPHQREDAVNSLAYEADMRL 82
              7******************************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 83 aa     Download sequence    
MASSSSYSLS SYSPCAACKF LRRKCQPECV FAPYFPTDQP QKFAYAHKIF GASNVTKLLN  60
ELQPHQREDA VNSLAYEADM RLQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65620.32e-43LBD family protein