PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT20765

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 245aa MW: 27032.9 Da PI: 5.5282

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT20765	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.5	0.0009	87	109	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ F ++ L H++ H OIT20765 87 FTCNFCKRKFYSSQALGGHQNAH 109 89*****************9988 PP

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence
METSIFDIEV QASSGIDSDI TSQVASNIEF SQLSSEHLSL DLSLSFKSST DELASQDSIG 60 FSVSSTCESS NEPTTQNSGG EAVRRVFTCN FCKRKFYSSQ ALGGHQNAHK RERTLAKQAM 120 RMGIFSDQRY ANLAALPLHV SSARSLGIKA HSSVHPHGFP PTMRSLDFRA SARFEYGQQQ 180 SPPLYVEDID EADQLLWPGS FRQVTNTDVS HHPTFAFAGC SNMTSLEWTP SVEKDELTPD 240 LTLRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66140.1	7e-40	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OIT20765