PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT20875
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 207aa    MW: 22698.4 Da    PI: 4.7522
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT20875genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.89.5e-172271155
       AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
              + y+G+r ++ +g+Wv+eIr+p++   ++r++lg+f t+e+Aa+a++ a+++l+g
  OIT20875 22 PVYRGIR-CR-SGKWVSEIREPRK---TTRIWLGTFPTPEMAAAAYDVAALALKG 71
              68****9.55.6*********843...5************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    
MADLSNIVVE NKQSTRTNTK HPVYRGIRCR SGKWVSEIRE PRKTTRIWLG TFPTPEMAAA  60
AYDVAALALK GSNNVVLNFP CHVNFYPKLP PSPSPADIRS AAATAAALMK KEAGEGTVVA  120
QQGDDDQLSR SSNGATYNEG DSVEFSSPES YNVQIGGKYV DEDDVFYMPS LIVDMAEAMM  180
MSPPRINSST CEDSRGDPSY IENLWSY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.11e-35ERF family protein