PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT21139
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MIKC_MADS
Protein Properties Length: 249aa    MW: 28712.7 Da    PI: 10.3627
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT21139genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF90.68.2e-29959151
              S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
    SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
              krienk+ rqvtfskRr g+lKKA+E+SvLCda+va+i+fs++gkl+eyss
  OIT21139  9 KRIENKISRQVTFSKRRSGLLKKANEISVLCDADVALIVFSTKGKLFEYSS 59
              79***********************************************96 PP
2K-box101.89.2e-3479173599
     K-box   5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
               + ++++   +e+++ e+ kL ++ie +qr++Rh+ G+dLe+Lsl+eLq+Leqq++++lk+iRs+Kn++++e+i+elqkkek+lqe+n++++kkl+
  OIT21139  79 KLNANDVDPMENWTVEYPKLMSRIELIQRNIRHYTGQDLEPLSLRELQSLEQQMDTALKRIRSRKNQVMHESISELQKKEKALQEQNNSMTKKLK 173
               55556667789*********************************************************************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    
MGRGRVQLKR IENKISRQVT FSKRRSGLLK KANEISVLCD ADVALIVFST KGKLFEYSSE  60
SSMESILERY ERYSYAERKL NANDVDPMEN WTVEYPKLMS RIELIQRNIR HYTGQDLEPL  120
SLRELQSLEQ QMDTALKRIR SRKNQVMHES ISELQKKEKA LQEQNNSMTK KLKDKDKKQS  180
GQTQPTSGQN SATFMLPQQP PPQSRQLPNL TIGGPFEATR VRNRDGGQAH YGSNSLMPPW  240
MIRHVNTDG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.11e-78MIKC_MADS family protein