PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT21236

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 523aa MW: 57334.6 Da PI: 8.8553

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT21236	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.1	1.5e-05	91	113	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H OIT21236 91 FVCEICNKGFQRDQNLQLHRRGH 113 89*******************88 PP
2	zf-C2H2	15.6	4.8e-05	167	189	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H++t+ OIT21236 167 WKCDKCSKKYAVQSDWKAHQKTC 189 58*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 523 aa Download sequence
MSNISGEEGS FSSGNSGDQQ VQKHNQAAHL KTSNNISSIT TTSNGSSSQS QQQQNKQQPL 60 AKKKRNLPGT PDPNAEVIAL SPTTLMATNR FVCEICNKGF QRDQNLQLHR RGHNLPWKLR 120 QRSTTEVRKR VYICPEPTCV HHNPARALGD LTGIKKHYSR KHGEKKWKCD KCSKKYAVQS 180 DWKAHQKTCG TREYKCDCGT IFSRRDSFIT HRAFCDALAE ENNKVNQGLI MNNNMEPNLQ 240 SGQMHGLMSS NASLGLSDCN NFDLKTPLKS LPQELFSIPF KSMNNNMAAG GMFSTTSGNL 300 FGSPRSVASS SSGLQLSSNI PSNFNYLQDS SKNGPGQGQA PMSATALLQK AAQMGATAGN 360 SINSPMMQKS FVTSAMAGPY VSPSLYENFQ TQPDNNTNNH QPNLAAVMND MGMYSGILMS 420 NDHQNINTEH DQENNNTNDS SSVRNQRTVL GHNGNNDLLT VDFLGVGGSS RPPSLHEQQR 480 LEAAINQQSM QASAINPFHQ QNISHGNNSA MEISSPYGIF EDN

Sequence ? help Back to Top

Protein Sequence Length: 523 aa Download sequence

MSNISGEEGS FSSGNSGDQQ VQKHNQAAHL KTSNNISSIT TTSNGSSSQS QQQQNKQQPL  60
AKKKRNLPGT PDPNAEVIAL SPTTLMATNR FVCEICNKGF QRDQNLQLHR RGHNLPWKLR  120
QRSTTEVRKR VYICPEPTCV HHNPARALGD LTGIKKHYSR KHGEKKWKCD KCSKKYAVQS  180
DWKAHQKTCG TREYKCDCGT IFSRRDSFIT HRAFCDALAE ENNKVNQGLI MNNNMEPNLQ  240
SGQMHGLMSS NASLGLSDCN NFDLKTPLKS LPQELFSIPF KSMNNNMAAG GMFSTTSGNL  300
FGSPRSVASS SSGLQLSSNI PSNFNYLQDS SKNGPGQGQA PMSATALLQK AAQMGATAGN  360
SINSPMMQKS FVTSAMAGPY VSPSLYENFQ TQPDNNTNNH QPNLAAVMND MGMYSGILMS  420
NDHQNINTEH DQENNNTNDS SSVRNQRTVL GHNGNNDLLT VDFLGVGGSS RPPSLHEQQR  480
LEAAINQQSM QASAINPFHQ QNISHGNNSA MEISSPYGIF EDN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44160.1	1e-101	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OIT21236