PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT21487

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

TCP

Protein Properties

Length: 297aa MW: 32477.3 Da PI: 8.1372

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT21487	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	115.1	9.1e-36	62	222	2	89
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg............. 88 a+k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti+WLlqqa+p+i+++tg ++++as+ ++ s+s+++ ++ OIT21487 62 APKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGYGTIPASALaVTGPSVSQQG---ISvsaglqqkmcels 159 789*************************************************************9999977752222222222...111123333334454 PP TCP 89 ..............................................................k 89 + OIT21487 160 gsissssfcrtnwpmvngnfgrphlattgiwppsttnlapessnylqkitslpgfdlpatnlN 222 444444455555555555555555555555555555555555555555555555555555550 PP

Sequence ? help Back to Top
Protein Sequence Length: 297 aa Download sequence
MFMDPKGSKQ PQEEISNFLS HPHPKNINTN ISSNMGENNP AEIKDFQIEI PDKDESKKQQ 60 LAPKRSSNKD RHTKVEGRGR RIRMPALCAA RIFQLTRELG HKSDGETIQW LLQQAEPSII 120 AATGYGTIPA SALAVTGPSV SQQGISVSAG LQQKMCELSG SISSSSFCRT NWPMVNGNFG 180 RPHLATTGIW PPSTTNLAPE SSNYLQKITS LPGFDLPATN LNPMSFTSML GAANPQQLPG 240 LKLGLSQDGH IGNLNSQSLS QIYQQMDHSR MHHSQQQQQQ QNQHQSLSPE DDSQGSG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27010.1	1e-69	TCP family protein

Link Out ? help Back to Top
Ensembl	OIT21487