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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | OIT21532 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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| Family | MYB | ||||||||
| Protein Properties | Length: 327aa MW: 37041.5 Da PI: 6.9925 | ||||||||
| Description | MYB family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Myb_DNA-binding | 53.9 | 4.1e-17 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
rg+W++eEd +l+ +++++G+g +W t ++++g++R++k+c++rw++yl
OIT21532 14 RGPWSPEEDAKLKSYIQLHGTGgNWITLPQKVGLKRCGKSCRLRWLNYL 62
89*********************************************97 PP
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| 2 | Myb_DNA-binding | 39.4 | 1.4e-12 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
g +T+eEd ++ + G++ W+ Ia+ ++ gRt++++k++w++
OIT21532 69 GEFTEEEDNIICSLYLSIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
78*******************.*********.***********97 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 327 aa Download sequence |
MGRAPCCDKA NVKRGPWSPE EDAKLKSYIQ LHGTGGNWIT LPQKVGLKRC GKSCRLRWLN 60 YLRPNIKHGE FTEEEDNIIC SLYLSIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLLGK 120 QRKDHRPRTG YLHNNKLDMM KENENFFAST PDINAYYSWP PQPLFSTLIA PQNDLAENSA 180 NFQYSPDQVY FSQDQLCQSS TNQLIASSAS MNPLNINTCD SSVISSYYSS NINGVINSFQ 240 EYNNYVPVGL NDVLNSTTSH SQQIDKSALE MVNSSTISTT SPDISTSWEE LSPLIVYPPS 300 VSNSETQQEI SPYYVFEESR YLGLLKQ |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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| Hit ID | E-value | Description | ||||
| AT3G49690.1 | 8e-76 | MYB family protein | ||||
| Link Out ? help Back to Top | |
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| Ensembl | OIT21532 |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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