PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT21550
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MIKC_MADS
Protein Properties Length: 227aa    MW: 26387 Da    PI: 9.7701
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT21550genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF93.21.2e-29959151
              S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
    SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
              krien++nrqvt+skRrng++KKA+EL vLCda+v++i++sstgkl+e++s
  OIT21550  9 KRIENQTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMISSTGKLHEFIS 59
              79***********************************************86 PP
2K-box97.91.5e-3271169199
     K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
               yqk+ g++l+++++e++q++l+kLk+ ++nLqre+R+++Ge+L++L++++L++L +++++slk iR++K++++ +qie+ +kk ++++e++++L  +++
  OIT21550  71 YQKTVGVDLWNSHYEKMQEQLRKLKDVNRNLQREIRQRMGESLNDLNYEQLEELNENVDNSLKLIRERKYKVIGNQIETYKKKVRNVEEIHRNLLLEFD 169
               899999***************************************************************************************987765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    
MARGKIQIKR IENQTNRQVT YSKRRNGLFK KANELTVLCD AKVSIIMISS TGKLHEFISP  60
SVTTKQLFDL YQKTVGVDLW NSHYEKMQEQ LRKLKDVNRN LQREIRQRMG ESLNDLNYEQ  120
LEELNENVDN SLKLIRERKY KVIGNQIETY KKKVRNVEEI HRNLLLEFDA RQEDPYGLVE  180
QEGDYNSVLG FPNGGPRILA LRLQPNHQPN HHLHSGGGSD ITTFALA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.12e-92MIKC_MADS family protein