PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT21583

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

LBD

Protein Properties

Length: 148aa MW: 16959.4 Da PI: 7.6755

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT21583	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	124.5	5.3e-39	5	104	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +CaaCk lrr+C++dC++ pyfp ++p++f +vh+++Gasnv k+l++++e++r d++++l+yeA +r++dPvyG+vg+i+ l++++ ql+ +la+lk+e OIT21583 5 RCAACKQLRRRCPSDCIFLPYFPPNNPQRFSCVHRIYGASNVGKMLQQVQEHQRADVADTLYYEAYCRIKDPVYGCVGIITVLHEEIYQLQCQLAKLKAE 104 6***********************************************************************************************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 148 aa Download sequence
MTSTRCAACK QLRRRCPSDC IFLPYFPPNN PQRFSCVHRI YGASNVGKML QQVQEHQRAD 60 VADTLYYEAY CRIKDPVYGC VGIITVLHEE IYQLQCQLAK LKAEIDLLKT QSPAQGQQVE 120 FSANLLADQN GVYTSSPSLF DPSFYWFY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26660.1	3e-49	LBD family protein

Link Out ? help Back to Top
Ensembl	OIT21583