PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT21599
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 186aa    MW: 21042.8 Da    PI: 8.239
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT21599genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.71.8e-121564555
              HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS
       HLH  5 hnerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55
               + +E++RR++++  ++eL +l+P++  ++s+  ls  + Le+A +YIk+Lq
  OIT21599 15 RKTIEKNRRNQLKALYSELNSLVPHQ--QHSREgLSLPDQLEEAANYIKKLQ 64
              6789*********************6..388889*****************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    
MEQCNKPSSL SKADRKTIEK NRRNQLKALY SELNSLVPHQ QHSREGLSLP DQLEEAANYI  60
KKLQINLERM RQRKESLTVD ENSSSIRSSS GRKETQPLLP HLEIYHVDSS LDVVLITRMD  120
YQFIFNDIIR MLHEENVEVV SASYTLIGDT IFHSIHSKVG ECATGYGATR ISDRLKKIVG  180
SGSGAS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.19e-43bHLH family protein