PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT21600
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 183aa    MW: 20690.4 Da    PI: 7.6414
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT21600genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH376e-121766555
              HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS
       HLH  5 hnerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55
               +  E++RR++++  + +L +l+P++  ++s+  ls  + Le+A++YIk Lq
  OIT21600 17 RKTTEKNRRNQMKALYLKLHSLVPHQ--QHSREvLSLPDQLEEAINYIKRLQ 66
              5678*********************6..488889*****************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    
MEQQCNNPSS SSSKADRKTT EKNRRNQMKA LYLKLHSLVP HQQHSREVLS LPDQLEEAIN  60
YIKRLQIDLE RMRQKKDSLK GGENSSCNST SDRMTGLSLP HIEIHSVDSA LQVVLTTGLD  120
YQFIFTDVIR LLHEEGVHVI NASYTLIGDT IVHSIHSKMG ECEPDQYGAA RISERLKKFV  180
GGC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.12e-38bHLH family protein