PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT21656
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family M-type_MADS
Protein Properties Length: 224aa    MW: 25079.3 Da    PI: 4.5013
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT21656genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF41.32e-138461351
              HHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
    SRF-TF 13 fskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
              + kR++ +lKK  ELS+LCd++++ ii+  +g++  +++
  OIT21656  8 LLKRKACVLKKTMELSILCDIKACAIIVDADGTVESWPK 46
              68***********************************86 PP
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    
MKADKRALLK RKACVLKKTM ELSILCDIKA CAIIVDADGT VESWPKYPTD LNPILDRYKQ  60
YSLKKQKKNN DVVVDVENTK GKENVLLALD SKIEAVKRRI EFLNGKSITA MNSDGDGERE  120
EFAEILSDII GGGSNSVNAQ EFGPTEIQPC AYWDGEIGFS TANYDQQLEL DPIEQPCSNG  180
HYGLSGNKNN TADVDFEFDL LMQDEYQFHI FSLLAPEHGQ ITFC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39810.15e-08M-type_MADS family protein