PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT21715

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

NF-YC

Protein Properties

Length: 227aa MW: 24820 Da PI: 4.8558

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT21715	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	179.3	3.5e-56	37	141	1	102
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ql++fw++q ie+++dfknh+lPlarikki+kadedv+misaeaP+l++kacelfilelt+rswlhaeenkrrtl+k+diaaa+trtdifdflvdivpr OIT21715 37 QLQMFWTYQrqeIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPR 137 89***998899************************************************************************************** PP NF-YC 99 delk 102 de+k OIT21715 138 DEIK 141 *975 PP

Sequence ? help Back to Top
Protein Sequence Length: 227 aa Download sequence
MENNQQSAAN AAAAAAAAAA YPAQPPYHHL LQQQQQQLQM FWTYQRQEIE QVNDFKNHQL 60 PLARIKKIMK ADEDVRMISA EAPILFAKAC ELFILELTIR SWLHAEENKR RTLQKNDIAA 120 AITRTDIFDF LVDIVPRDEI KEEGGVGLGP AGIVGSTASG VPYYYPPMGQ PAPPGVMMGR 180 PAMPGVDPSM YVQPPPSQAW QSVWQAAEDN SYASGGSSGP GNLDGQS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	110	116	RRTLQKN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48590.1	1e-97	NF-YC family protein

Link Out ? help Back to Top
Ensembl	OIT21715