PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT21735

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB

Protein Properties

Length: 181aa MW: 21091.9 Da PI: 9.327

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT21735	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56	8.9e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg W+++Ed++l+d+++q+G g+W+ ++ g+ R++k+c++rw +yl OIT21735 14 RGTWSKQEDQKLIDYITQHGEGCWRNLPKAAGLLRCGKSCRLRWMNYL 61 89****************************99**********97 PP
2	Myb_DNA-binding	53.8	4.4e-17	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++++Ed+l+++++++lG++ W++Ia +++ gRt+ ++k++w+++l OIT21735 67 RGNFSEDEDDLIIRLHALLGNR-WSLIAGRLP-GRTDSEVKNYWNSHL 112 89******************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 181 aa Download sequence
MRKTCCDNKE EMHRGTWSKQ EDQKLIDYIT QHGEGCWRNL PKAAGLLRCG KSCRLRWMNY 60 LRPNLKRGNF SEDEDDLIIR LHALLGNRWS LIAGRLPGRT DSEVKNYWNS HLRRKLIKMG 120 IDPNNHLISH YLHRKSLEFW TENSRRETDG SLLSDTGSSC ANDQQPIRSL PDLNSLPSIH 180 P

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22640.1	6e-69	MYB family protein

Link Out ? help Back to Top
Ensembl	OIT21735