PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT21801

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 448aa MW: 49591.9 Da PI: 6.3745

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT21801	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.3	7.5e-05	340	377	12	54
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ +++l+ + +K + a++L +A+eYIk L OIT21801 340 RKEKLGDRITAIQQLVSPF-----GKTDTASVLHEAIEYIKFL 377 5566777888888888887.....8****************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 448 aa Download sequence
MADEFQAGVC GGNWWNSSRS IFGSSLCAAS SIGNNFAWPN NDLLDMKSSC RSNDESGNSD 60 DSVVLQELPK HDSTLQMLGI GLSSSSTSST PDWNHTMMHG NERGDSSYPS ILQEDLNSSL 120 NYRQETGVDC SHELGKNFST ITEDSSNNSF KHQDFTLGMN PITSSTHTDQ STVISSSFPM 180 NSSFSNYPSA LLQTLFDNDP PPPPQQQPQQ QSFFTNNNQP MNFPVSLNYR PNLNDHFSPS 240 LPKFPPLLRP SLPKQTPSSF PFTNPTSLNN MRGNLLPSMH SQLLLQSPTF HEKSSVPNNS 300 AKSNVEELRE SRAKKSGNSE PAFKRPRMET PSPLPTFKVR KEKLGDRITA IQQLVSPFGK 360 TDTASVLHEA IEYIKFLHDQ VNVLSTPYLK TGSPPQHQQS ADKVKEQEGS KQDLRSRGLC 420 LVPISSTFPV ATETTTDFWT PNFGGTFR

Sequence ? help Back to Top

Protein Sequence Length: 448 aa Download sequence

MADEFQAGVC GGNWWNSSRS IFGSSLCAAS SIGNNFAWPN NDLLDMKSSC RSNDESGNSD  60
DSVVLQELPK HDSTLQMLGI GLSSSSTSST PDWNHTMMHG NERGDSSYPS ILQEDLNSSL  120
NYRQETGVDC SHELGKNFST ITEDSSNNSF KHQDFTLGMN PITSSTHTDQ STVISSSFPM  180
NSSFSNYPSA LLQTLFDNDP PPPPQQQPQQ QSFFTNNNQP MNFPVSLNYR PNLNDHFSPS  240
LPKFPPLLRP SLPKQTPSSF PFTNPTSLNN MRGNLLPSMH SQLLLQSPTF HEKSSVPNNS  300
AKSNVEELRE SRAKKSGNSE PAFKRPRMET PSPLPTFKVR KEKLGDRITA IQQLVSPFGK  360
TDTASVLHEA IEYIKFLHDQ VNVLSTPYLK TGSPPQHQQS ADKVKEQEGS KQDLRSRGLC  420
LVPISSTFPV ATETTTDFWT PNFGGTFR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20640.1	3e-57	bHLH family protein

Link Out ? help Back to Top
Ensembl	OIT21801