PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIT21895
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MIKC_MADS
Protein Properties Length: 245aa    MW: 28487.1 Da    PI: 9.2766
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIT21895genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF94.16.2e-30959151
              S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
    SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
              krienk+nrqvtfskRr g+lKKA+E+SvLCdaev +i+fs++gkl+eys+
  OIT21895  9 KRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVGLIVFSTKGKLFEYST 59
              79***********************************************96 PP
2K-box105.37.6e-35761742100
     K-box   2 qkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
               ++++ +++++++  s++ e+akLk+++e Lqr+qRh+ GedL+sLs+keLq+Le+qL+++lk iRs+Kn+l++e+i+elqkk k+lqe+n++L+k+++e
  OIT21895  76 AERQLTATDHETPGSWTLEHAKLKARLEVLQRNQRHYAGEDLDSLSMKELQNLEHQLDSALKYIRSRKNQLMHESISELQKKDKALQEQNNKLSKQVKE 174
               66777788888899**********************************************************************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    
MGRGRVQLKR IENKINRQVT FSKRRSGLLK KAHEISVLCD AEVGLIVFST KGKLFEYSTD  60
SCMERILERY ERYSYAERQL TATDHETPGS WTLEHAKLKA RLEVLQRNQR HYAGEDLDSL  120
SMKELQNLEH QLDSALKYIR SRKNQLMHES ISELQKKDKA LQEQNNKLSK QVKEREKELA  180
QQTQWEQQSH DHLNSSSFVL SQPLSSLHLG EAYPTAGDNG EVEGSSRQQQ QNTVMPPWML  240
RHLNN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.11e-105MIKC_MADS family protein