PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT21937

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 562aa MW: 61611.2 Da PI: 7.9316

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT21937	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.7	9.6e-06	86	108	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F+r nL+ H r H OIT21937 86 FFCEICNKGFKRDQNLQLHRRGH 108 67*******************88 PP

Sequence ? help Back to Top
Protein Sequence Length: 562 aa Download sequence
MMNIQQKQQN FHVEENMSNL TSASGEASLS SSNNMNDTTT GGIFIPQNQN PPQQQIKKKR 60 NQAGNPDPEA EVIALSPKTL LATNRFFCEI CNKGFKRDQN LQLHRRGHNL PWKLKQRTNK 120 EVIKKVYVCP EPSCVHHDSS RALGDLTGIK KHFSRKHGEK KWKCEKCSKR YAVQSDCKAH 180 SKTCGTREYR CECGTLFSRR DSFITHRAFC DTLAAESARS AITGVNPIIS FSSQAAGSTS 240 TSHMNQLQFQ TPQYFNNSHE FPAAAAFSMK KEQSNYDFNH LRHNTEIPQW LVSCQPFVGA 300 GPGPPSSVPA DFSSSVFQAT RFDHEYTQSH QDLTSTDFHE NPNPNFGGRV TSLAPPYHST 360 GEAAVSPHIS ATALLQKAAE LGATMSNKAN AVSASSPAHS TGPAAILMRQ LPHQTHVSVT 420 TDSAAAAGSK QTDQFELNLS SREFELTNST GLINTLGNSY GNKVAAATVP SFSFTNATGF 480 EGSTFEDAFG GFGSLNSKKD NDFNGATFSE TTSGINEDIM TKDFLGLRPL SHSDIFNIAG 540 LVNTTSSENE DQFQNHNKTW QS

Sequence ? help Back to Top

Protein Sequence Length: 562 aa Download sequence

MMNIQQKQQN FHVEENMSNL TSASGEASLS SSNNMNDTTT GGIFIPQNQN PPQQQIKKKR  60
NQAGNPDPEA EVIALSPKTL LATNRFFCEI CNKGFKRDQN LQLHRRGHNL PWKLKQRTNK  120
EVIKKVYVCP EPSCVHHDSS RALGDLTGIK KHFSRKHGEK KWKCEKCSKR YAVQSDCKAH  180
SKTCGTREYR CECGTLFSRR DSFITHRAFC DTLAAESARS AITGVNPIIS FSSQAAGSTS  240
TSHMNQLQFQ TPQYFNNSHE FPAAAAFSMK KEQSNYDFNH LRHNTEIPQW LVSCQPFVGA  300
GPGPPSSVPA DFSSSVFQAT RFDHEYTQSH QDLTSTDFHE NPNPNFGGRV TSLAPPYHST  360
GEAAVSPHIS ATALLQKAAE LGATMSNKAN AVSASSPAHS TGPAAILMRQ LPHQTHVSVT  420
TDSAAAAGSK QTDQFELNLS SREFELTNST GLINTLGNSY GNKVAAATVP SFSFTNATGF  480
EGSTFEDAFG GFGSLNSKKD NDFNGATFSE TTSGINEDIM TKDFLGLRPL SHSDIFNIAG  540
LVNTTSSENE DQFQNHNKTW QS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13810.1	1e-103	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OIT21937