PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT22115

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

TCP

Protein Properties

Length: 360aa MW: 41471.4 Da PI: 6.6824

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT22115	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	105.7	7.3e-33	110	211	1	66
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.................................... 65 a+g+kdrhsk++T+ g++dRRvRls ++a++f+d+qd+LG+d++sk+i+WL+++ak+ai++l ++ OIT22115 110 ATGRKDRHSKVSTASGPKDRRVRLSPNTAIQFYDVQDRLGYDRPSKAIDWLIKKAKAAIDALENNpfqvlsrkidstnkalswrtinaeneegqlileqsp 210 589**************************************************************888887766555444444433333333333332222 PP TCP 66 s 66 + OIT22115 211 K 211 0 PP

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence
MNHQLQVSDE EYKSSSEEEK EKQEVVFQEN ILPSHYQNQH FHQFCQTHAD SHYAKLANFT 60 SPSATLVPKH QNNTQWSSYK QEIKNVSPKK KPNRTNTDVI EVHRSRIVRA TGRKDRHSKV 120 STASGPKDRR VRLSPNTAIQ FYDVQDRLGY DRPSKAIDWL IKKAKAAIDA LENNPFQVLS 180 RKIDSTNKAL SWRTINAENE EGQLILEQSP KVSQEYSDIP KYECEVHNDN PNGNLSLFSS 240 VNDTTIQSVS DFQRYQQGHF HSEIKNEDQG NFFNFQSSQN ELRENSTFSF LSHNFPSVLG 300 QNQLFYQRES LQSSDFSVPL NTQFQTVSYA NNGFVNEEEE HGTFSTPSAI KATTLLHYQD

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence

MNHQLQVSDE EYKSSSEEEK EKQEVVFQEN ILPSHYQNQH FHQFCQTHAD SHYAKLANFT  60
SPSATLVPKH QNNTQWSSYK QEIKNVSPKK KPNRTNTDVI EVHRSRIVRA TGRKDRHSKV  120
STASGPKDRR VRLSPNTAIQ FYDVQDRLGY DRPSKAIDWL IKKAKAAIDA LENNPFQVLS  180
RKIDSTNKAL SWRTINAENE EGQLILEQSP KVSQEYSDIP KYECEVHNDN PNGNLSLFSS  240
VNDTTIQSVS DFQRYQQGHF HSEIKNEDQG NFFNFQSSQN ELRENSTFSF LSHNFPSVLG  300
QNQLFYQRES LQSSDFSVPL NTQFQTVSYA NNGFVNEEEE HGTFSTPSAI KATTLLHYQD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31070.1	2e-24	TCP family protein

Link Out ? help Back to Top
Ensembl	OIT22115