PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIT22171

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB

Protein Properties

Length: 259aa MW: 28800.2 Da PI: 9.0531

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIT22171	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	59.7	6.2e-19	40	85	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd++l ++v+++G ++W++I++++ gR++k+c++rw + OIT22171 40 KGPWSAEEDKILTKLVERYGARNWSLISKYIK-GRSGKSCRLRWCNQ 85 79***************************9.*********985 PP
2	Myb_DNA-binding	53.7	4.7e-17	94	136	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++++ Ed+ ++ a++++G++ W+tIar ++ gRt++ +k++w++ OIT22171 94 PFSQTEDDTILAAHAKYGNR-WATIARLLP-GRTDNAVKNHWNST 136 79****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 259 aa Download sequence
MEFLNRCSTS TTSSSCESSS SESSLSGKTP RDGKKSERIK GPWSAEEDKI LTKLVERYGA 60 RNWSLISKYI KGRSGKSCRL RWCNQLSPNV QHRPFSQTED DTILAAHAKY GNRWATIARL 120 LPGRTDNAVK NHWNSTLKRR YQQLLQQQQK QSSVVFSDVK INGSTSGSGP CMDYMNSNES 180 PIRGNFPINN VVTTNCCSEF DDPMTTLSLA PPGMGGDELP EKKTESFPAG FWDVMRDVIA 240 KEVREYVASS FSGASTGFP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37260.1	1e-56	MYB family protein

Link Out ? help Back to Top
Ensembl	OIT22171